Acquire Codebase Knowledge

Produces seven populated documents in docs/codebase/ covering everything needed to work effectively on the project. Only document what is verifiable from files or terminal output — never infer or assume.

Output Contract (Required)

Before finishing, all of the following must be true:

1. Exactly these files exist in docs/codebase/: STACK.md, STRUCTURE.md, ARCHITECTURE.md, CONVENTIONS.md, INTEGRATIONS.md, TESTING.md, CONCERNS.md.
2. Every claim is traceable to source files, config, or terminal output.
3. Unknowns are marked as [TODO]; intent-dependent decisions are marked [ASK USER].
4. Every document includes a short "evidence" list with concrete file paths.
5. Final response includes numbered [ASK USER] questions and intent-vs-reality divergences.

Workflow

Copy and track this checklist:

- [ ] Phase 1: Run scan, read intent documents
- [ ] Phase 2: Investigate each documentation area
- [ ] Phase 3: Populate all seven docs in docs/codebase/
- [ ] Phase 4: Validate docs, present findings, resolve all [ASK USER] items

Focus Area Mode

If the user supplies a focus area (for example: "architecture only" or "testing and concerns"):

1. Always run Phase 1 in full.
2. Fully complete focus-area documents first.
3. For non-focus documents not yet analyzed, keep required sections present and mark unknowns as [TODO].
4. Still run the Phase 4 validation loop on all seven documents before final output.

Phase 1: Scan and Read Intent

1. Run the scan script from the target project root:

   python3 "$SKILL_ROOT/scripts/scan.py" --output docs/codebase/.codebase-scan.txt

Where $SKILL_ROOT is the absolute path to the skill folder. Works on Windows, macOS, and Linux.

Quick start: If you have the path inline:

   python3 /absolute/path/to/skills/acquire-codebase-knowledge/scripts/scan.py --output docs/codebase/.codebase-scan.txt

1. Search for PRD, TRD, README, ROADMAP, SPEC, DESIGN files and read them.
2. Summarise the stated project intent before reading any source code.

Phase 2: Investigate

Use the scan output to answer questions for each of the seven templates. Load [references/inquiry-checkpoints.md](references/inquiry-checkpoints.md) for the full per-template question list.

If the stack is ambiguous (multiple manifest files, unfamiliar file types, no package.json), load [references/stack-detection.md](references/stack-detection.md).

Phase 3: Populate Templates

Copy each template from assets/templates/ into docs/codebase/. Fill in this order:

1. [STACK.md](assets/templates/STACK.md) — language, runtime, frameworks, all dependencies
2. [STRUCTURE.md](assets/templates/STRUCTURE.md) — directory layout, entry points, key files
3. [ARCHITECTURE.md](assets/templates/ARCHITECTURE.md) — layers, patterns, data flow
4. [CONVENTIONS.md](assets/templates/CONVENTIONS.md) — naming, formatting, error handling, imports
5. [INTEGRATIONS.md](assets/templates/INTEGRATIONS.md) — external APIs, databases, auth, monitoring
6. [TESTING.md](assets/templates/TESTING.md) — frameworks, file organization, mocking strategy
7. [CONCERNS.md](assets/templates/CONCERNS.md) — tech debt, bugs, security risks, perf bottlenecks

Use [TODO] for anything that cannot be determined from code. Use [ASK USER] where the right answer requires team intent.

Phase 4: Validate, Repair, Verify

Run this mandatory validation loop before finalizing:

1. Validate each doc against references/inquiry-checkpoints.md.
2. For each non-trivial claim, confirm at least one evidence reference exists.
3. If any required section is missing or unsupported:

• Fix the document.
• Re-run validation.

1. Repeat until all seven docs pass.

Then present a summary of all seven documents, list every [ASK USER] item as a numbered question, and highlight any Intent vs. Reality divergences from Phase 1.

Validation pass criteria:

• No unsupported claims.
• No empty required sections.
• Unknowns use [TODO] rather than assumptions.
• Team-intent gaps are explicitly marked [ASK USER].

Gotchas

Monorepos: Root package.json may have no source — check for workspaces, packages/, or apps/ directories. Each workspace may have independent dependencies and conventions. Map each sub-package separately.

Outdated README: README often describes intended architecture, not the current one. Cross-reference with actual file structure before treating any README claim as fact.

TypeScript path aliases: tsconfig.json paths config means imports like @/foo don't map directly to the filesystem. Map aliases to real paths before documenting structure.

Generated/compiled output: Never document patterns from dist/, build/, generated/, .next/, out/, or __pycache__/. These are artefacts — document source conventions only.

.env.example reveals required config: Secrets are never committed. Read .env.example, .env.template, or .env.sample to discover required environment variables.

devDependencies ≠ production stack: Only dependencies (or equivalent, e.g. [tool.poetry.dependencies]) runs in production. Document linters, formatters, and test frameworks separately as dev tooling.

Test TODOs ≠ production debt: TODOs inside test/, tests/, __tests__/, or spec/ are coverage gaps, not production technical debt. Separate them in CONCERNS.md.

High-churn files = fragile areas: Files appearing most in recent git history have the highest modification rate and likely hidden complexity. Always note them in CONCERNS.md.

Anti-Patterns

Enhanced Scan Output Sections

The scan.py script now produce the following sections in addition to the original output:

• CODE METRICS — Total files, lines of code by language, largest files (complexity signals)
• CI/CD PIPELINES — Detected GitHub Actions, GitLab CI, Jenkins, CircleCI, etc.
• CONTAINERS & ORCHESTRATION — Docker, Docker Compose, Kubernetes, Vagrant configs
• SECURITY & COMPLIANCE — Snyk, Dependabot, SECURITY.md, SBOM, security policies
• PERFORMANCE & TESTING — Benchmark configs, profiling markers, load testing tools

Use these sections during Phase 2 to inform investigation questions and identify tool-specific patterns.

Bundled Assets

Template usage mode:

• Default mode: complete only the "Core Sections (Required)" in each template.
• Extended mode: add optional sections only when the repo complexity justifies them.